CRAN Package Check Results for Package NMF

Last updated on 2024-07-23 05:57:38 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.27 40.33 696.86 737.19 OK
r-devel-linux-x86_64-debian-gcc 0.27 24.71 516.93 541.64 NOTE
r-devel-linux-x86_64-fedora-clang 0.27 1051.31 NOTE
r-devel-linux-x86_64-fedora-gcc 0.27 870.63 NOTE
r-devel-windows-x86_64 0.27 36.00 555.00 591.00 NOTE
r-patched-linux-x86_64 0.27 48.27 670.97 719.24 OK
r-release-linux-x86_64 0.27 33.63 676.56 710.19 OK
r-release-macos-arm64 0.27 270.00 NOTE
r-release-macos-x86_64 0.27 346.00 WARN
r-release-windows-x86_64 0.27 36.00 543.00 579.00 OK
r-oldrel-macos-arm64 0.27 275.00 NOTE
r-oldrel-macos-x86_64 0.27 589.00 NOTE
r-oldrel-windows-x86_64 0.27 45.00 702.00 747.00 OK

Additional issues

noRemap

Check Details

Version: 0.27
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: NMFfit-class.Rd: getRNG nmf.Rd: foreach, doParallel seed.Rd: setRNG Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 0.27
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘BiocManager’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.27
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘doMPI’ Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.27
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: --- re-building ‘NMF-vignette.Rnw’ using knitr Error in citation(x) : there is no package called 'doMPI' Converted 9 of 10 package citations to BibTeX Writing 11 Bibtex entries ... OK Results written to file 'Rpackages.bib' Error: processing vignette 'NMF-vignette.Rnw' failed with diagnostics: Running 'texi2dvi' on 'NMF-vignette.tex' failed. LaTeX errors: ! Undefined control sequence. l.215 \hlkwd{install.packages}\hldef {(}\hlsng{'NMF'}\hldef{)} ? ! Emergency stop. ! Emergency stop. l.215 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘NMF-vignette.Rnw’ --- re-building ‘heatmaps.Rnw’ using knitr Converted 2 of 2 package citations to BibTeX Writing 4 Bibtex entries ... OK Results written to file 'Rpackages.bib' Error: processing vignette 'heatmaps.Rnw' failed with diagnostics: Running 'texi2dvi' on 'heatmaps.tex' failed. LaTeX errors: ! Undefined control sequence. l.273 \hldef {X} \hlkwb{<-} \hlkwd{syntheticNMF}\hldef{(}\hlnum{100}\hldef{,}... ? ! Emergency stop. l.273 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘heatmaps.Rnw’ SUMMARY: processing the following files failed: ‘NMF-vignette.Rnw’ ‘heatmaps.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64