canaper: Categorical Analysis of Neo- And Paleo-Endemism

Provides functions to analyze the spatial distribution of biodiversity, in particular categorical analysis of neo- and paleo-endemism (CANAPE) as described in Mishler et al (2014) <doi:10.1038/ncomms5473>. 'canaper' conducts statistical tests to determine the types of endemism that occur in a study area while accounting for the evolutionary relationships of species.

Version: 1.0.1
Depends: R (≥ 4.1.0)
Imports: ape, assertr, assertthat, dplyr, future.apply, phyloregion, progressr, purrr, stats, tibble, vegan
Suggests: rmarkdown, knitr, future, tictoc, patchwork, testthat (≥ 3.0.0), stringr, magrittr, covr, picante, withr, fs, readr, usethis, scales, colorBlindness
Published: 2023-05-04
DOI: 10.32614/CRAN.package.canaper
Author: Joel H. Nitta ORCID iD [aut, cre], Shawn W. Laffan [ctb, dtc], Brent D. Mishler [ctb, dtc], Wataru Iwasaki ORCID iD [ctb], Klaus Schliep ORCID iD [rev]
Maintainer: Joel H. Nitta <joelnitta at>
License: MIT + file LICENSE
NeedsCompilation: no
Language: en-US
Citation: canaper citation info
Materials: README NEWS
CRAN checks: canaper results


Reference manual: canaper.pdf
Vignettes: CANAPE example
How many randomizations?
Parallel computing


Package source: canaper_1.0.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): canaper_1.0.1.tgz, r-oldrel (arm64): canaper_1.0.1.tgz, r-release (x86_64): canaper_1.0.1.tgz, r-oldrel (x86_64): canaper_1.0.1.tgz
Old sources: canaper archive


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