chainbinomial: Chain Binomial Models for Analysis of Infectious Disease Data

Implements the chain binomial model for analysis of infectious disease data. Contains functions for calculating probabilities of the final size of infectious disease outbreaks using the method from D. Ludwig (1975) <doi:10.1016/0025-5564(75)90119-4> and for outbreaks that are not concluded, from Lindstrøm et al. (2024) <doi:10.48550/arXiv.2403.03948>. The package also contains methods for estimation and regression analysis of secondary attack rates.

Version: 0.1.5
Depends: R (≥ 3.5.0)
Imports: generics
Suggests: testthat (≥ 3.0.0), numDeriv (≥ 2016.8-1.1), dplyr (≥ 1.1.3), tidyr (≥ 1.3.0), tibble, knitr, rmarkdown
Published: 2024-05-27
DOI: 10.32614/CRAN.package.chainbinomial
Author: Jonas Christoffer Lindstrøm [aut, cre]
Maintainer: Jonas Christoffer Lindstrøm <jonaslindstrom88 at>
License: GPL-3
NeedsCompilation: no
Materials: NEWS
CRAN checks: chainbinomial results


Reference manual: chainbinomial.pdf
Vignettes: Analyzing chain data with glm
Introduction to the chainbinomial package


Package source: chainbinomial_0.1.5.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel: not available
macOS binaries: r-release (arm64): chainbinomial_0.1.5.tgz, r-oldrel (arm64): chainbinomial_0.1.5.tgz, r-release (x86_64): chainbinomial_0.1.5.tgz, r-oldrel (x86_64): chainbinomial_0.1.5.tgz


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