findGSEP: Estimate Genome Size of Polyploid Species Using k-Mer Frequencies

Provides tools to estimate the genome size of polyploid species using k-mer frequencies. This package includes functions to process k-mer frequency data and perform genome size estimation by fitting k-mer frequencies with a normal distribution model. It supports handling of complex polyploid genomes and offers various options for customizing the estimation process. The basic method 'findGSE' is detailed in Sun, Hequan, et al. (2018) <doi:10.1093/bioinformatics/btx637>.

Version: 1.2.0
Depends: R (≥ 4.2.0), RColorBrewer, ggplot2, grDevices
Imports: pracma, scales, dplyr
Suggests: knitr, rmarkdown
Published: 2024-05-26
Author: Laiyi Fu [aut, cre], Hequan Sun [aut]
Maintainer: Laiyi Fu <fulaiyi321 at 163.com>
BugReports: https://github.com/sperfu/findGSEP/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/sperfu/findGSEP
NeedsCompilation: no
Materials: README
CRAN checks: findGSEP results

Documentation:

Reference manual: findGSEP.pdf
Vignettes: vignette

Downloads:

Package source: findGSEP_1.2.0.tar.gz
Windows binaries: r-devel: findGSEP_1.2.0.zip, r-release: findGSEP_1.2.0.zip, r-oldrel: findGSEP_1.2.0.zip
macOS binaries: r-release (arm64): findGSEP_1.2.0.tgz, r-oldrel (arm64): findGSEP_1.2.0.tgz, r-release (x86_64): findGSEP_1.2.0.tgz, r-oldrel (x86_64): findGSEP_1.2.0.tgz

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